PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G237500.5.p | ||||||||
Common Name | GLYMA_02G237500, LOC100786265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 341aa MW: 38245.5 Da PI: 8.9059 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 5.1e-19 | 73 | 161 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp kf+eeh +k+ +++lede+g ++e + +++ + l++GW+ F+ +++L++gD +vF+l++ s+f Glyma.02G237500.5.p 73 FIKSMVRSHVYSCFWLGLPSKFCEEHL-PKTL-HDMVLEDENGSEYEAVY--IGNRAG--LSGGWRAFALDHKLDDGDALVFELIEASRF 156 89************************4.4555.49***************..555544..*************************99999 PP ..EEEEE CS B3 91 elvvkvf 97 ++ ++ Glyma.02G237500.5.p 157 --KIYIV 161 ..55555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-21 | 66 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-23 | 68 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-27 | 71 | 162 | No hit | No description |
PROSITE profile | PS50863 | 12.788 | 73 | 164 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.2E-23 | 73 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-17 | 73 | 161 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MLPLFKNWLL ILSKVNIDLP PLRKRSRSSS SSWGSYIARP LDEIKEATKE ERLCALEAAE 60 AIQINLNSSN PSFIKSMVRS HVYSCFWLGL PSKFCEEHLP KTLHDMVLED ENGSEYEAVY 120 IGNRAGLSGG WRAFALDHKL DDGDALVFEL IEASRFKIYI VRAFPDSVEE KGNNILEEEG 180 NVRATKAPKA ACNLESECKT KKPKQAAVYE TKESESSQEY LLDSSIDNEV KPQGVNPTNK 240 ETKFSQKNTP KKSKYPATAD SKGKVQIKTE KPKASIKLSN NTRKSKEGIN EIGGSDKLEK 300 NEFVQDADSK LEKVELVEEA RKCVTKKLEK TSSKFFRKKA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G237500.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 3e-71 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624894.1 | 0.0 | putative B3 domain-containing protein At5g58280 isoform X3 | ||||
TrEMBL | K7KAD1 | 0.0 | K7KAD1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G40400.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 4e-48 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G237500.5.p |
Entrez Gene | 100786265 |