PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G227000.1.p
Common NameGLYMA_02G227000, LOC100795085
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 696aa    MW: 75835.4 Da    PI: 5.9936
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G227000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07271291526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd C +aHg
  Glyma.02G227000.1.p 271 PCPEFRK-GSCSKGDACEYAHG 291
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.01E-1220172No hitNo description
Gene3DG3DSA:1.25.40.201.2E-1555179IPR020683Ankyrin repeat-containing domain
PfamPF127967.0E-770141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-1471173IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.57374179IPR020683Ankyrin repeat-containing domain
SMARTSM002481.574104IPR002110Ankyrin repeat
PROSITE profilePS5008812.502109144IPR002110Ankyrin repeat
SMARTSM002484.8E-4109141IPR002110Ankyrin repeat
SMARTSM003568.6E-5266292IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5271291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094271293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4299329IPR000571Zinc finger, CCCH-type
SMARTSM003564.7301324IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.08301325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MCGVSKGKPS QIDLIMEEKY AKEGMHHKIS ALLEFSATDD LIGFKDAVEK EGHDVDGVGF  60
WYGRRVGSKK IGYEERTPLM VASMFGSLDV STYILGMGCI DVNRASRSDG ATALHCAVAG  120
GSAASVEVVK LLLDASADVS AVDANGNRSI DLIVSVANSI FNQRSSVLQA LLEGTSDADQ  180
ACLSLPEVID QLEEQRQDMT TPRVSKDYPI DLSLPDIKNG IYGTDEFRMY TFKVKPCSRA  240
YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGSC SKGDACEYAH GIFECWLHPA  300
QYRTRLCKDE GGCTRRVCFF AHKLEELRPL YASTGSAIPS PRSYSASASA LEMGSVNPIA  360
LGSPSVLMPP TSTPPLTPSG ASSPIAGSMW SQSNVSVPTL QLPKSRLKTA STVRDTDLDM  420
ELLGLETHWR RQQLMMDEIS ALSSPNWKNS MPNSPSFRVP LNDHTGELNR LSGVKPANLE  480
DMFGSLDPSI LSKYHGISLD VAGPQLQSPT GIQMRQNVNQ QLGGYSSSLS TLNVIGSRSF  540
RLDQSGEAAS VALNPRVAAF AKRSQSFIER GVVNHHSELP SPKPSTFSNW GSPVGKLDWA  600
VNGEELNKLR KSASFGFRGS DTPLTKTSTK MSANVDDEPD VSWVNSLVKD APPESGESGE  660
YSVEDQRKLL QCHNGTDAIP AWLEQLYLDQ EQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.33310.0cotyledon| epicotyl| flower| leaf| meristem| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G227000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877020.0KM587702.1 Glycine max clone GmC3H3 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519252.10.0zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_014624714.10.0zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_014624716.10.0zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_014624718.10.0zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_028214493.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A445LSI10.0A0A445LSI1_GLYSO; Zinc finger CCCH domain-containing protein 66
TrEMBLI1JHD20.0I1JHD2_SOYBN; Uncharacterized protein
STRINGGLYMA02G39210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-176C3H family protein