PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G188900.1.p
Common NameGLYMA_02G188900, LOC100813005
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19869.2 Da    PI: 9.4576
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G188900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.73.6e-141151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i+n  +r+  + kR+ng+lKK  E+ +LC++e++ ii+s++
  Glyma.02G188900.1.p 11 ISNPKKRKEVLKKRKNGLLKKVDEITTLCGIEACAIIYSPD 51
                         899999999******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.685149IPR002100Transcription factor, MADS-box
CDDcd002667.11E-24283No hitNo description
SuperFamilySSF554551.83E-19393IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-8323IPR002100Transcription factor, MADS-box
PfamPF003196.8E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MARKKVDLAY ISNPKKRKEV LKKRKNGLLK KVDEITTLCG IEACAIIYSP DEPEPQVWSS  60
DQGVESVIFK FRGVSELTRN KRMFCQESLL RKNIIQVQGQ LKKLRNENRM KEINLFMCQY  120
FVGGNHLDKS NIIDLNDITF LADKKLEEIT KKIEMLHVQE VTPTTENEEK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLAYISNPKKRKEVLKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G188900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518146.11e-124agamous-like MADS-box protein AGL80
RefseqXP_028189406.11e-124agamous-like MADS-box protein AGL80
TrEMBLA0A0B2PC481e-122A0A0B2PC48_GLYSO; Agamous-like MADS-box protein AGL80
TrEMBLK7K9F11e-122K7K9F1_SOYBN; Uncharacterized protein
STRINGGLYMA02G34160.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1699628
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-35AGAMOUS-like 80