PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G185500.1.p
Common NameGLYMA_02G185500, LOC100792278
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 27921.7 Da    PI: 6.5616
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G185500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien   rqvtfskRrng+lKKA+ELSvLCdaevaviifsstgklye+s+
  Glyma.02G185500.1.p  9 KKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSN 59
                         68***********************************************95 PP
2K-box63.29.5e-229517520100
                K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                          + + L +ei +L++   +++G++L+ LslkeLqqLe+qL ++++++++kK+++l+eq+++++ +e+++  en+ Lrk+lee
  Glyma.02G185500.1.p  95 DTNLLMEEITKLRSAYLRMMGKELDGLSLKELQQLENQLSEGMQSVKDKKEQVLVEQLRKSRIQEQKAMLENEVLRKQLEE 175
                          567899************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.983161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32274IPR002100Transcription factor, MADS-box
CDDcd002652.47E-43276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.6689179IPR002487Transcription factor, K-box
PfamPF014867.5E-1596173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KAKELSVLCD AEVAVIIFSS TGKLYEFSNT  60
SMEHTLSRYS KGAESDSAEQ PIDVPPTDVM AVEPDTNLLM EEITKLRSAY LRMMGKELDG  120
LSLKELQQLE NQLSEGMQSV KDKKEQVLVE QLRKSRIQEQ KAMLENEVLR KQLEEIQNKT  180
KSQFLEFSSL DRTFSKNGSK SLFNCASEEN DLSDTSLQLG LSTDYGRQRK ALKMEPCNDS  240
GSQVASH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-22187187MEF2 CHIMERA
6byy_B6e-22187187MEF2 CHIMERA
6byy_C6e-22187187MEF2 CHIMERA
6byy_D6e-22187187MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During the reproductive phase, accumulates in immature buds and at the base of the floral organs, and in the receptacle, ovules, anther filaments, and stigma and style of open flowers. Later observed in sporogenous tissue of anthers. During male gametogenesis, expressed in the microspores before they separate from each other. Later present at high levels within pollen grains up to stage 13 of flower development, when anthers dehisce. During carpel development, first detected in developing ovules. After fertilization, confined to globular structures or nodules of proliferating free nuclear endosperm required for embryo development. Disappears from the endosperm at to the heart stage of embryo development, when very little nuclear endosperm remains. Never detected in developing embryos at any stage. In young seedlings, present everywhere except in a portion of the hypocotyl and in newly emerging leaves. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:17521410}.
UniprotTISSUE SPECIFICITY: Mostly expressed in pollen, roots, flowers and siliques, and to a lower extent, in stems and leaves. Expressed in the endosperm and in developing male and female gametophytes. Also present in seedlings. {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:16028119, ECO:0000269|PubMed:17521410}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Function -- GeneRIF ? help Back to Top
  1. Constitutive expression of soybean orthologs of the Arabidopsis (Arabidopsis thaliana) MADS box genes Agamous-like15 (GmAGL15) and GmAGL18 increased embryogenic competence of explants from these transgenic soybean plants.
    [PMID: 24481137]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G185500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354152e-96AC235415.1 Glycine max strain Williams 82 clone GM_WBb0132C18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006575259.11e-180agamous-like MADS-box protein AGL18
RefseqXP_028210096.11e-180agamous-like MADS-box protein AGL18
SwissprotQ9M2K82e-66AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A445LQP61e-179A0A445LQP6_GLYSO; Agamous-like MADS-box protein AGL18
TrEMBLI1JGA31e-179I1JGA3_SOYBN; Uncharacterized protein
STRINGGLYMA02G33040.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.19e-69AGAMOUS-like 18
Publications ? help Back to Top
  1. Zheng Q,Perry SE
    Alterations in the transcriptome of soybean in response to enhanced somatic embryogenesis promoted by orthologs of Agamous-like15 and Agamous-like18.
    Plant Physiol., 2014. 164(3): p. 1365-77
    [PMID:24481137]