PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G115300.1.p | ||||||||
Common Name | GLYMA_02G115300, LOC100807311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 502aa MW: 56290.5 Da PI: 8.8491 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 444 | 466 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F++ L H r+H Glyma.02G115300.1.p 444 HECPICNKIFRSGQALGGHKRSH 466 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-4 | 12 | 36 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.7E-6 | 14 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 14 | 41 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 16 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.26E-8 | 112 | 133 | No hit | No description |
Pfam | PF13912 | 5.2E-7 | 113 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.26E-8 | 439 | 466 | No hit | No description |
Pfam | PF13912 | 2.2E-11 | 443 | 466 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 444 | 466 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 444 | 466 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 446 | 466 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MMMSYQSMEE TRKFVCKYCS KRFPCGKSLG GHIRTHMMSS EHHHSALANN EERNNNNNNA 60 ANAMFKFDGG RKKKRDLGSE ENGNNNNYGL RENPKKTTRF VHSNATLQLD KFCKECGKGF 120 PSLKALCGHM ACHSEKDKGG FATEKQKLVM DSQSDTETSS APRRSKRMKS KTLSSSNNNN 180 NNQPQSSSVS EVEQEQEELA RCLMMLSKDS SYKGRFALLT ESSDNNSVVI TKSPSLETKV 240 TTMMNVYGKN SMERKLELEQ HKDLKFKSVE VGYDSDNSDS GYFRYGPKSD ESNDEFFRNE 300 VKSSKVGYLN GFDQEYDVVE SRKVLSRGRS RSSEFKKFVL EDWESYDRED GDVAARKFGS 360 KKFKKSNYDD DSLGQNLGGV STRKYECLTS ERYNGCSDDS AYESDENSTD TDSYPAPKAH 420 HSNRNNLSGN KGKKKLKSKK SKAHECPICN KIFRSGQALG GHKRSHFIGG SEENTLVIRP 480 SAPPAAVPCL IDLNLPAPVD E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G115300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 3e-81 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520110.2 | 0.0 | putative uncharacterized protein DDB_G0287457 | ||||
Refseq | XP_028203157.1 | 0.0 | putative uncharacterized protein DDB_G0287457 | ||||
TrEMBL | A0A445LMJ7 | 0.0 | A0A445LMJ7_GLYSO; Uncharacterized protein | ||||
TrEMBL | K7K7S5 | 0.0 | K7K7S5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G12840.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 | Representative plant | OGRP5450 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-73 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G115300.1.p |
Entrez Gene | 100807311 |