PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G105900.1.p

Common Name

GLYMA_02G105900, LOC100781296

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 425aa MW: 44178.7 Da PI: 6.9201

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G105900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.5	4e-41	69	196	2	111
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Glyma.02G105900.1.p 69 PPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPsh 158 789******************************************************************999777777777775555544 PP TCP 89 ...............kaaksaakskksqksaasalnla 111 +aa++aa+ +++ + + s++ ++ Glyma.02G105900.1.p 159 yfrgnyfnpstfstsAAAAAAAQLRSRAEWDRSMSMVM 196 44444444444443222222223333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.2E-40	74	217	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.683	75	129	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MELEADHQNG IRSRLNFPLQ LLEKKDIDDV TEQPCSTTSV VTATTTAITT TTTSDNNDLH 60 LAEQSKKPPP KRSSTKDRHT KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ 120 QAEPAVIAAT GTGTIPANFT SLNISLRSSG STMSAPSHYF RGNYFNPSTF STSAAAAAAA 180 QLRSRAEWDR SMSMVMEDSR RSMLENTSSI SAILNFNPMG NVNVIQQAKQ ELREESGGGG 240 GLESVASDSD GSLGRKRRPE QELSQMGSYL IQSSTGSLPA SHASNTAAFW MVAGHGNQAM 300 SGGGSGGGGN NGSSDNNPIW AIPSVGNSGV YRGAMSAPGG IHFMNFASPM NLMPGGQLGS 360 GIVGGGGGGG GNGGAQLLSE SNLGMLAALN AYRQIPANGV SEPPGSAGQH HGGDDGRDST 420 SQHS*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MELEADHQNG IRSRLNFPLQ LLEKKDIDDV TEQPCSTTSV VTATTTAITT TTTSDNNDLH  60
LAEQSKKPPP KRSSTKDRHT KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLQ  120
QAEPAVIAAT GTGTIPANFT SLNISLRSSG STMSAPSHYF RGNYFNPSTF STSAAAAAAA  180
QLRSRAEWDR SMSMVMEDSR RSMLENTSSI SAILNFNPMG NVNVIQQAKQ ELREESGGGG  240
GLESVASDSD GSLGRKRRPE QELSQMGSYL IQSSTGSLPA SHASNTAAFW MVAGHGNQAM  300
SGGGSGGGGN NGSSDNNPIW AIPSVGNSGV YRGAMSAPGG IHFMNFASPM NLMPGGQLGS  360
GIVGGGGGGG GNGGAQLLSE SNLGMLAALN AYRQIPANGV SEPPGSAGQH HGGDDGRDST  420
SQHS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.12840	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G105900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520071.1	0.0	transcription factor TCP15
TrEMBL	K7K7K6	0.0	K7K7K6_SOYBN; Uncharacterized protein
STRING	GLYMA02G11781.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80
Representative plant	OGRP2699	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-46	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G105900.1.p
Entrez Gene	100781296