PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G073900.3.p | ||||||||
Common Name | GLYMA_02G073900, LOC100792644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 334aa MW: 36127.2 Da PI: 5.8724 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.2 | 1.9e-17 | 239 | 272 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Glyma.02G073900.3.p 239 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.7E-71 | 2 | 327 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.543 | 233 | 269 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.1E-17 | 233 | 283 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 237 | 270 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.05E-14 | 237 | 296 | No hit | No description |
CDD | cd00202 | 7.70E-14 | 238 | 285 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 239 | 264 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-15 | 239 | 272 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MIGNFIDDID CGSFFDHIDD LLEFPDDNAA PVAPPANFWS AESDSLPASY TVFSDNSVTD 60 LSAELSVSYD DIVQLEWLSN FVEDSFSGGS ITMKKEEEPQ CTTTTKEDIA HAQFQTASPV 120 SVLESSSFCS GEKAASRGPE IYIPVPCGRV RSKRPRPATF NPHPVMQLIS PASSTGENVQ 180 HNATTTSKAA SSDSENFAES VIKGPKQASG EHKNKRKIKV TFSSGQEQQN APSQAVRKCL 240 HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFCAAVH SNSHKKVIEM 300 RNKTGTKSGF ATDSAASPEL IPNTNNSLTL EYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 156 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26744 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G073900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519961.2 | 0.0 | GATA transcription factor 8 isoform X1 | ||||
Refseq | XP_006574762.1 | 0.0 | GATA transcription factor 8 isoform X2 | ||||
Refseq | XP_006574763.1 | 0.0 | GATA transcription factor 8 isoform X2 | ||||
Refseq | XP_028199233.1 | 0.0 | GATA transcription factor 8-like isoform X1 | ||||
Refseq | XP_028199239.1 | 0.0 | GATA transcription factor 8-like isoform X2 | ||||
Refseq | XP_028199247.1 | 0.0 | GATA transcription factor 8-like isoform X2 | ||||
TrEMBL | A0A0R0KTZ8 | 0.0 | A0A0R0KTZ8_SOYBN; GATA transcription factor | ||||
TrEMBL | A0A445LKN1 | 0.0 | A0A445LKN1_GLYSO; GATA transcription factor | ||||
TrEMBL | A0A445LKP3 | 0.0 | A0A445LKP3_GLYSO; GATA transcription factor | ||||
TrEMBL | K7K6X9 | 0.0 | K7K6X9_SOYBN; GATA transcription factor | ||||
STRING | GLYMA02G08145.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 8e-43 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G073900.3.p |
Entrez Gene | 100792644 |