PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G073900.2.p
Common NameGLYMA_02G073900, LOC100792644
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 334aa    MW: 36127.2 Da    PI: 5.8724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G073900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17239272134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Glyma.02G073900.2.p 239 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.7E-712327IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.543233269IPR000679Zinc finger, GATA-type
SMARTSM004019.1E-17233283IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-14237296No hitNo description
CDDcd002027.70E-14238285No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003204.1E-15239272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MIGNFIDDID CGSFFDHIDD LLEFPDDNAA PVAPPANFWS AESDSLPASY TVFSDNSVTD  60
LSAELSVSYD DIVQLEWLSN FVEDSFSGGS ITMKKEEEPQ CTTTTKEDIA HAQFQTASPV  120
SVLESSSFCS GEKAASRGPE IYIPVPCGRV RSKRPRPATF NPHPVMQLIS PASSTGENVQ  180
HNATTTSKAA SSDSENFAES VIKGPKQASG EHKNKRKIKV TFSSGQEQQN APSQAVRKCL  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFCAAVH SNSHKKVIEM  300
RNKTGTKSGF ATDSAASPEL IPNTNNSLTL EYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.267440.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G073900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519961.20.0GATA transcription factor 8 isoform X1
RefseqXP_006574762.10.0GATA transcription factor 8 isoform X2
RefseqXP_006574763.10.0GATA transcription factor 8 isoform X2
RefseqXP_028199233.10.0GATA transcription factor 8-like isoform X1
RefseqXP_028199239.10.0GATA transcription factor 8-like isoform X2
RefseqXP_028199247.10.0GATA transcription factor 8-like isoform X2
TrEMBLA0A0R0KTZ80.0A0A0R0KTZ8_SOYBN; GATA transcription factor
TrEMBLA0A445LKN10.0A0A445LKN1_GLYSO; GATA transcription factor
TrEMBLA0A445LKP30.0A0A445LKP3_GLYSO; GATA transcription factor
TrEMBLK7K6X90.0K7K6X9_SOYBN; GATA transcription factor
STRINGGLYMA02G08145.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-43GATA family protein