PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G070000.1.p
Common NameGLYMA_02G070000, LOC100806421
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 355aa    MW: 40900.3 Da    PI: 8.6545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G070000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17.2e-5391401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  Glyma.02G070000.1.p   9 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKFDPWELPAKAEFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 97 
                          79****************************.89***************99999************************************* PP

                  NAM  91 evlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++      +e+ g+kk Lvfykgr pkg+kt+W+mheyr+
  Glyma.02G070000.1.p  98 NIVASlpgggVREHFGVKKALVFYKGRPPKGVKTNWIMHEYRF 140
                          ****9998776677***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-636167IPR003441NAC domain
PROSITE profilePS5100561.2779167IPR003441NAC domain
PfamPF023653.1E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGTPQSNNLP PGFRFHPTDE ELILHYLRKK VASIPLPVSI IAEVDIYKFD PWELPAKAEF  60
GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKNIV ASLPGGGVRE HFGVKKALVF  120
YKGRPPKGVK TNWIMHEYRF VDTNRPIRIK DTSMRLDDWV LCRIYKKTKH AVSPTTEAAS  180
STLQVINEQL DQAEEEEQIK DNLLPILKNN TTLVPPQQTT LLMSQKSLSF SNLLDATDYS  240
MLSTILSENN HSNNYLTPSE ALFNNCENLD QEITPQNYYY NNNTNSYLFQ KNPSHMENMA  300
RPKRHLSNMD HEDNMILYPS KKYQSSSCNF PNSNPQWNFM FKQPLMSPQY LPFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-72817119172NAC domain-containing protein 19
3swm_B6e-72817119172NAC domain-containing protein 19
3swm_C6e-72817119172NAC domain-containing protein 19
3swm_D6e-72817119172NAC domain-containing protein 19
3swp_A6e-72817119172NAC domain-containing protein 19
3swp_B6e-72817119172NAC domain-containing protein 19
3swp_C6e-72817119172NAC domain-containing protein 19
3swp_D6e-72817119172NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.441750.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G070000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619101e-172EU661910.1 Glycine max NAC domain protein (NAC8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518189.10.0NAC transcription factor 29
RefseqXP_028198850.10.0NAC domain-containing protein 2-like
SwissprotQ84TD61e-96NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A445LKX20.0A0A445LKX2_GLYSO; NAC transcription factor 47 isoform A
TrEMBLI1JD350.0I1JD35_SOYBN; Uncharacterized protein
STRINGGLYMA02G07700.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.15e-98NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]