PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G051100.1.p | ||||||||
Common Name | GLYMA_02G051100, LOC100786449 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 352aa MW: 38823.2 Da PI: 7.4249 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.7 | 1.5e-18 | 269 | 303 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l Glyma.02G051100.1.p 269 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 303 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.47E-14 | 261 | 325 | No hit | No description |
PROSITE profile | PS50114 | 11.939 | 263 | 299 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.1E-16 | 263 | 317 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 267 | 301 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 269 | 294 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.46E-15 | 269 | 316 | No hit | No description |
Pfam | PF00320 | 1.9E-16 | 269 | 303 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MKERGTFQPL FNALPNSLII LQSFNFIPSL LSTTPSSFPS FLLSQAEKEM ECLEAALKSS 60 FRKDMALKQT LFLEEFSSAS NVQNVVASSD DLFVDDLLNF SLLENNTNNN NNNEEPDQQL 120 NNHDSTTPQN NQENYNYNPS FNDNNFNTEL TVPAEEEVAD LEWLSRFVED SNFSEYSLPF 180 PATVTEKVKV KSPEPGNTAF TFKTPVPAKA RSKRTRTGVR VWPLKSPSLA AASSTTTSSS 240 SSSSPSSPQR ADSRAKKRAA ADGGAARRCS HCGVQKTPQW RTGPLGAKTL CNACGVRYKS 300 GRLLPEYRPA CSPTFSSELH SNHHRKVLEM RRKKEDVPEP DTASPPSLPG F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.44053 | 0.0 | seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G051100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519878.1 | 0.0 | GATA transcription factor 5 | ||||
Refseq | XP_028196769.1 | 0.0 | GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 2e-65 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A445LJX4 | 0.0 | A0A445LJX4_GLYSO; GATA transcription factor | ||||
TrEMBL | K7K6I9 | 0.0 | K7K6I9_SOYBN; GATA transcription factor | ||||
STRING | GLYMA02G05710.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 2e-46 | GATA transcription factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G051100.1.p |
Entrez Gene | 100786449 |