PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G010900.1.p
Common NameGLYMA_02G010900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 321aa    MW: 36070.9 Da    PI: 6.8406
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G010900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.85.4e-34165222259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp+vv++tYeg+H+h+
  Glyma.02G010900.1.p 165 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHP 222
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381307.6E-1311320IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.4E-34149224IPR003657WRKY domain
SuperFamilySSF1182902.88E-29156224IPR003657WRKY domain
PROSITE profilePS5081131.881159224IPR003657WRKY domain
SMARTSM007742.0E-40164223IPR003657WRKY domain
PfamPF031062.0E-26165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKKEMAVKT EDAIGSSSFP CYNSNLYPFS NAFDFSEVDK SSLGFMELLG VQDYSPLPEL  60
PQLSTVSVQP HHSTVKVPSD NGKECSEVLN HQPATPNSSS ISSASSDAVN DEQNKTLLDQ  120
AEEDDDEEEG QQKTKKQLKP KKTNQKRQRE PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN  180
SPFPRSYYRC TSVSCNVKKR VERSFTDPSV VVTTYEGQHT HPSPVMPRSG VSAGYANNFG  240
SVLPPGNYLS QYQHYHHQQQ QQHLVNTLSS LGFPYNDSSS PKNAVFTQER RLCSNHGTNA  300
FLRDHGLLQD VVPSHMLKEE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28154225778Probable WRKY transcription factor 4
2lex_A5e-28154225778Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.574900.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G010900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0962120.0BT096212.1 Soybean clone JCVI-FLGm-20F5 unknown mRNA.
GenBankKM5876970.0KM587697.1 Glycine max clone GmWRKY3 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192666.10.0WRKY transcription factor 23-like
SwissprotO229002e-68WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0B2PLN10.0A0A0B2PLN1_GLYSO; WRKY transcription factor
TrEMBLI1JBE70.0I1JBE7_SOYBN; WRKY transcription factor
STRINGGLYMA02G01420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-60WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]