PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G222300.1.p | ||||||||
Common Name | GLYMA_01G222300, LOC102667019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27894.4 Da PI: 7.2755 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.8 | 1.1e-28 | 120 | 176 | 2 | 57 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+++tY+ eH Glyma.01G222300.1.p 120 SDPWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKHVERSHLDPGVFIVTYTAEHS 176 799************************998**************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-27 | 106 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.491 | 114 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-25 | 115 | 180 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-33 | 119 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-23 | 121 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDWDLQAIVG CNKAPAATVM DNPHLIFSQH FCPEEQDDLL CNFQEFSETT TVVDELEELY 60 KPSYPRHVHD NPLPVVANSP PILDEKVKEL KPSDKTASRC KKSKKRQKNK RVVTAADGVS 120 DPWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKHVERS HLDPGVFIVT YTAEHSDPHP 180 TCKNSQQRKN SSTIPLPTTR TRDDQHTLIP VVAEAIEDEH EEIKELKKEE DFVEGVGFQA 240 SKLRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-17 | 114 | 175 | 9 | 69 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G222300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573789.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | K7K594 | 0.0 | K7K594_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G43130.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 5e-23 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G222300.1.p |
Entrez Gene | 102667019 |