PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G221500.1.p | ||||||||
Common Name | GLYMA_01G221500, LOC100800542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 647aa MW: 71971.9 Da PI: 6.5533 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.1 | 3.1e-08 | 423 | 460 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ qV++WF N R + Glyma.01G221500.1.p 423 FEHflHPYPSDVDKHILARQTGLSRGQVSNWFINARVR 460 554459******************************88 PP | |||||||
2 | BELL | 117.4 | 6.8e-38 | 285 | 355 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLls+leeVd+rYk+y++q++ v+ssFeavag g+a++Y +lAlka+SrhFrcLkd i+ qi Glyma.01G221500.1.p 285 FVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMAQI 355 679******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-55 | 221 | 353 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-45 | 227 | 351 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.758 | 401 | 464 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-8 | 404 | 468 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.58E-11 | 404 | 465 | No hit | No description |
SuperFamily | SSF46689 | 1.11E-16 | 405 | 471 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 407 | 470 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-17 | 421 | 460 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MARQPCDDKS SSGFCYSDVS SGNPTMLVNQ IQGFVSDPEM YNLTTGMEMI GFPKSDTNAV 60 MWRSFIPKPG PSSSKTINDN STTFYHHDYN NKHADFTPAG NISQTSADNL IVGSHDSASW 120 QDNINNNNNS SRFDDSSLRC VFPCETNERP SQGLSLSLSS TNPSSIGLQS FELRQTGQHL 180 DFVSSSSRDG FFGKPVSLQQ QQMVSQDGYV SSNSKVASVY QQGHFLVKNS KFLVPAQDLL 240 NEFCSLDAKQ SDLGKPTKSL NKKQWEEENN GIGSSKKHSL TSLEFVELQK RKTKLLSMLE 300 EVDRRYKHYR NQMKSVVSSF EAVAGNGAAT VYSALALKAM SRHFRCLKDG IMAQIQATRK 360 AMGEKDPVAP GTTRGETPRL KVIDQTLRQQ RAFQQMSMME THPWRPQRGL PERAVSVLRA 420 WLFEHFLHPY PSDVDKHILA RQTGLSRGQV SNWFINARVR LWKPMVEEMY LEEVKDPENN 480 IASSEGATDQ DNDINPNNVE YPPPPSSSRS EDQKPSLVRI DSECASSIIN NHSTPDNKND 540 PKGHEQCFGS VELDFSSYTH HSSGIVSYGS NDQNGNNNQS GVSLTLGLQQ HGVSLAFPPA 600 TQSSLYYPRD QIEDCQPVQY SLFDGEGQNL PYRNLMGAQL LHDLAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-15 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-15 | 410 | 468 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39711 | 0.0 | seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G221500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517476.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_006573786.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_014632543.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_028247538.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_028247545.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_028247553.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-140 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A445M7B1 | 0.0 | A0A445M7B1_GLYSO; Homeobox protein BEL1-like isoform A | ||||
TrEMBL | I1JA88 | 0.0 | I1JA88_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G43040.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4650 | 20 | 30 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-133 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G221500.1.p |
Entrez Gene | 100800542 |
Publications ? help Back to Top | |||
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