PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G198700.1.p
Common NameGLYMA_01G198700, LOC100818142
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 251aa    MW: 27387.3 Da    PI: 6.618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G198700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001284106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C + F++   L  H+++H
  Glyma.01G198700.1.p  84 YTCTFCRREFRSAQALGGHMNVH 106
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-681111No hitNo description
Gene3DG3DSA:3.30.160.600.00182109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-584107IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15784111IPR007087Zinc finger, C2H2
SMARTSM003550.006684106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAAEIGLVSM TQIQNLSQTQ HPKNPQPPQP KNPNTTTTSS STWMWNPREQ QQQQVEDDDD  60
SWEVRAFAED TRNIMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQAPPSS  120
CSNPMSSSLP TSSFINIPPQ ELVGNAGLCL LYHLPTSPSS APPFPSPTSN GASPSTLLSI  180
SSYPTNNFLM QTSFNFPGAP PTGINTTTVS SLCYNSSKVE QSATSSSIDN GHLEELDLEL  240
RLGHKPTPTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1379106229superman protein
2l1o_A2e-1379106229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G198700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0384860.0HM038486.1 Glycine max PALMATE-LIKE PENTAFOLIATA2 (PALM2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516632.10.0transcriptional regulator SUPERMAN
RefseqXP_028245128.10.0transcriptional regulator SUPERMAN
TrEMBLK7K4T80.0K7K4T8_SOYBN; Uncharacterized protein
STRINGGLYMA01G40671.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-34C2H2 family protein