PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G190100.1.p
Common NameGLYMA_01G190100, MYB112
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 306aa    MW: 33367.9 Da    PI: 9.3148
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G190100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.34.9e-20550147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Glyma.01G190100.1.p  5 KGPWSPEEDEALQKLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50
                         79******************************.***********985 PP
2Myb_DNA-binding51.72e-1659101347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Glyma.01G190100.1.p  59 AFTHEEDDTIIRAHARFGNK-WATIARLLH-GRTDNAIKNHWNST 101
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.219155IPR017930Myb domain
SuperFamilySSF466892.58E-32298IPR009057Homeodomain-like
SMARTSM007174.3E-18453IPR001005SANT/Myb domain
PfamPF002491.4E-19550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-26658IPR009057Homeodomain-like
CDDcd001671.83E-17749No hitNo description
SMARTSM007173.6E-1356104IPR001005SANT/Myb domain
PROSITE profilePS5129419.94557106IPR017930Myb domain
CDDcd001671.12E-1059102No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2259105IPR009057Homeodomain-like
PfamPF002494.2E-1459101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDRIKGPWSP EEDEALQKLV EKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF  60
THEEDDTIIR AHARFGNKWA TIARLLHGRT DNAIKNHWNS TLKRKCTSTM IDDDNTPPLK  120
RSLSAGAAIP VSTGLYMNPP TPGSPSGSDV SESSVLVASS SHVFRPVPRT GAVLPPVETT  180
TTLSSNDPPT SLSLSLPGVD SSEVSNRTTE PIHAAPPPPP QPQPQPLNTI PLLPMMTVPS  240
VSPTGMAPFN FSAEFLAVMQ EMIRKEVRSY MELHNQKNGM CFQAAVNDGF RNASVKRIGI  300
SRVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-4141063105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-4141063105C-Myb DNA-Binding Domain
1msf_C6e-4141063105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.287320.0cotyledon| flower| leaf| pod| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G190100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312620.0KT031262.1 Glycine max clone HN_CCL_49 MYB/HD-like transcription factor (Glyma11g05550.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235142.20.0MYB transcription factor MYB112
SwissprotO231609e-99MYB73_ARATH; Transcription factor MYB73
TrEMBLQ0PJJ10.0Q0PJJ1_SOYBN; MYB transcription factor MYB112
STRINGGLYMA01G39740.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-91myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]