PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G189100.1.p
Common NameGLYMA_01G189100, LOC100804089
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 322aa    MW: 35166.9 Da    PI: 10.1091
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G189100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31250307359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Glyma.01G189100.1.p 250 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHT 307
                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-16200246IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.1E-33236307IPR003657WRKY domain
PROSITE profilePS5081130.894243309IPR003657WRKY domain
SuperFamilySSF1182903.79E-27245308IPR003657WRKY domain
SMARTSM007742.1E-38248308IPR003657WRKY domain
PfamPF031062.9E-27250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAVEFMMGYR NDTFAEDNAV REAASGLESV EKLIKLLSHT QQQYQTTSKS SMENIDTDYT  60
AVADVAVSKF KKVISLLGRT RTGHARFRRA PVPVPVPVAS PPPSEPRVYR ATPLQQIPPP  120
TLHTHSVTDH SLIPKIERKD SSKTINFSYS NSFVSSLTAG DTDTKQPCSS SPSPATAFQI  180
TNLSQVSSAG KPPLSSSSLK RKCSSENLGS AKCGSSSSRC HCSKKSRKMR QKRVVRVPAI  240
SLKMADIPPD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERAL DDPSMLVVTY  300
EGEHNHTLSA AEATNLILES S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-212463101578Probable WRKY transcription factor 4
2lex_A1e-212463101578Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.198340.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00275DAPTransfer from AT2G23320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G189100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5876990.0KM587699.1 Glycine max clone GmWRKY35 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517316.10.0probable WRKY transcription factor 15 isoform X1
SwissprotO221761e-91WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLA0A0R0LIG20.0A0A0R0LIG2_SOYBN; Uncharacterized protein
STRINGGLYMA01G39600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-67WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]