PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G167900.1.p
Common NameGLYMA_01G167900, LOC100778767
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 345aa    MW: 39585.3 Da    PI: 4.9072
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G167900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.63.3e-5591372129
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          ppGfrFhPtdeelv +yL+kkv+++k++l +vi+e+d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
  Glyma.01G167900.1.p   9 PPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIREIDLYRIEPWDLQErcRIGYdEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 97 
                          9****************************.9***************953433333667******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          dk+v++ + +l+g++ktLvfykgrap+g+k+dW+mheyrle
  Glyma.01G167900.1.p  98 DKAVYE-RAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-595157IPR003441NAC domain
PROSITE profilePS5100559.4598157IPR003441NAC domain
PfamPF023651.3E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MESMESCIPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI REIDLYRIEP WDLQERCRIG  60
YDEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VYERAKLIGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLESDE NGPPQEEGWV VCRAFKKKTT GQTKTINIEG WDSSYFYEEA  180
SGASTVVDPI ELISRQSQSF VAQNFMCKQE LEADNLSCML QDPFVQLPQL ESPSLPLVKR  240
PSTVSLVSDN NEDEDIQNRL LSNNNNTKKV TTDWRALDKF VASQLSQEVD THESNGVPSS  300
FQPHDDNHDM ALLLLQSSRD EGNRLSPFLN TSSDCDIGIC VFEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-52515812169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.575240.0hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Expressed in root metaxylem pole and in shoot pre-procambium and procambium (PubMed:18445131). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G167900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941620.0BT094162.1 Soybean clone JCVI-FLGm-18C16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517186.10.0NAC domain-containing protein 37
RefseqXP_006573563.10.0NAC domain-containing protein 37
RefseqXP_028241587.10.0NAC domain-containing protein 37-like
RefseqXP_028241595.10.0NAC domain-containing protein 37-like
SwissprotQ9SL411e-161NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A445M4190.0A0A445M419_GLYSO; NAC domain-containing protein 37 isoform A
TrEMBLK7K4960.0K7K496_SOYBN; Uncharacterized protein
STRINGGLYMA01G37310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-152vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]