PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G166800.1.p
Common NameGLYMA_01G166800, LOC100775555
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 297aa    MW: 33266.5 Da    PI: 7.6779
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G166800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-203697257
                         T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+t+t++q+++L+el+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Glyma.01G166800.1.p 36 STRWTPTNDQIRILKELYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 97
                         58*****************8567*************************************97 PP
2Wus_type_Homeobox112.71.8e-363599265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++tRWtPt++Qi+iL+ely+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Glyma.01G166800.1.p 35 SSTRWTPTNDQIRILKELYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 99
                         789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1130103IPR009057Homeodomain-like
PROSITE profilePS5007111.0293298IPR001356Homeobox domain
SMARTSM003891.2E-534102IPR001356Homeobox domain
PfamPF000461.4E-173797IPR001356Homeobox domain
CDDcd000866.52E-83799No hitNo description
Gene3DG3DSA:1.10.10.601.9E-73797IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMEPQQQQQQ AQGSQQQQQN EDGGSGKGGF LSRQSSTRWT PTNDQIRILK ELYYNNGIRS  60
PSAEQIQRIS ARLRQYGKIE GKNVFYWFQN HKARERQKKR FTSDHNHNNV PMQRPPTNPS  120
AAWKPDLADP IHTTKYCNIS STAGISSASS SVEMVTVGQM GNYGYGSVPM EKSFRDCSIS  180
AGGSSGHVGL INHNLGWVGV DPYNSSTYAN FFDKIRPSDQ ETLEEEAENI GATKIETLPL  240
FPMHGEDIHG YCNLKSNSYN YDGNGWYHTE EGFKNASRAS LELSLNSYTR RSPDYA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G166800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8730900.0EU873090.1 Glycine max wuschel gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517180.20.0protein WUSCHEL
RefseqXP_028211599.10.0protein WUSCHEL-like
SwissprotQ8LL115e-84WUS_PETHY; Protein WUSCHEL
TrEMBLA0A445M4470.0A0A445M447_GLYSO; Protein WUSCHEL
TrEMBLK7K4870.0K7K487_SOYBN; Uncharacterized protein
STRINGGLYMA01G37190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-51WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]