PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G150500.1.p

Common Name

GLYMA_01G150500, LOC100812635

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 309aa MW: 36075.4 Da PI: 8.4842

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G150500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89	5.3e-28	49	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i++r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk ++++ ++ ++cp+f++l+ Glyma.01G150500.1.p 49 QWSQQETREFIAIRAELERDFTASKRNKTLWEVVSAKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----GKQCPFFEELH 130 7**************************************************************999986....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.1E-4	46	108	IPR001005	SANT/Myb domain
CDD	cd12203	7.34E-27	48	113	No hit	No description
Pfam	PF13837	3.5E-24	48	131	No hit	No description
PROSITE profile	PS50090	7.608	50	106	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MFGGGGEDAL AARLGMMPPS LLNPASVMSG EMSPAVPAAR EERGPAQPQW SQQETREFIA 60 IRAELERDFT ASKRNKTLWE VVSAKMRERG FRRSPEQCKC KWKNLVNRYK GKETSDPEHG 120 KQCPFFEELH AVFTQRAHNM QRLLLESETR SAQTKKGVKR SSGDRSSEEL SEDDNEVEYD 180 SEEEKPSRSN TRKRKVDKVG VEKSSRASNP SNSASNSTSI QEMLKEFFQH QLSMEMQWRE 240 MMERRAHERQ LFEQEWRQSM EKLERERLMI EQAWREREEQ RRMREESRAE RRDALLTTLL 300 NKLINESN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-14	50	120	7	77	DNA binding protein GT-1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G150500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003516496.1	0.0	trihelix transcription factor GT-3b
Refseq	XP_028239567.1	0.0	trihelix transcription factor GT-3b-like
TrEMBL	A0A445M3D8	0.0	A0A445M3D8_GLYSO; Trihelix transcription factor GT-3b
TrEMBL	K7K3Z3	0.0	K7K3Z3_SOYBN; Uncharacterized protein
STRING	GLYMA01G35370.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85
Representative plant	OGRP2262	15	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-40	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G150500.1.p
Entrez Gene	100812635