PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G147600.1.p | ||||||||
Common Name | GLYMA_01G147600, LOC100804801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 22896.4 Da PI: 9.016 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a++ ++g Glyma.01G147600.1.p 61 SVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALTIKG 111 78*****998.**********854...59*********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.2E-12 | 61 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 61 | 120 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.60E-30 | 61 | 121 | No hit | No description |
PROSITE profile | PS51032 | 23.051 | 62 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 62 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVEPAVAASS ELSDSTRNTN TNTPSPSSSS SLSPSPSPSS SSSKKRARDN NNSRNNSNKH 60 SVYRGVRMRT WGKWVSEIRE PRKKNRIWLG TFATAEMAAR AHDVAALTIK GSSAILNFPE 120 LAASLPRPAS NSPRDVQAAA AKAASMEAPP RTPPSPAATP EDDLGEIVEL PPLGTSFDSP 180 DRSSEFVFLD MDDGWPYSHP WATALMMVGT SLAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-20 | 50 | 119 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G147600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517069.1 | 1e-151 | dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 1e-57 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | K7K3X3 | 1e-150 | K7K3X3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G35010.2 | 1e-151 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G147600.1.p |
Entrez Gene | 100804801 |
Publications ? help Back to Top | |||
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