PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G056800.2.p
Common NameGLYMA_01G056800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 298aa    MW: 32856.1 Da    PI: 5.081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G056800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.8e-33145202259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Glyma.01G056800.2.p 145 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 202
                          8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-34129203IPR003657WRKY domain
SuperFamilySSF1182903.14E-28136202IPR003657WRKY domain
PROSITE profilePS5081129.712139204IPR003657WRKY domain
SMARTSM007743.2E-38144203IPR003657WRKY domain
PfamPF031069.9E-26145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEDKDRAASS DPTADAEFAG DTSWTLAADD SDGAYLFPGD RERSILREFV WNLEPDQPNR  60
IGTDDGLWKP VQSSLTDSIE PVAAAPSRSN NQSISSSSSE DPPEKSTVSD DKPPEIPSKG  120
KNKGQKRIRQ PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TNSKCTVKKR  180
VERSSEDPTI VITTYEGQHC HHTVGFPRGG IISHEAAFAS QLAPTMSQFY YPIQLPRDNN  240
NNNNSFSSIS QPCQAYDDAE GGLSAMMPLP ADVSSQSQPS TDEGLLGDIV PPGMRIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26134201774Probable WRKY transcription factor 4
2lex_A6e-26134201774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212160.0cotyledon| flower| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G056800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753450.0EU375345.1 Glycine max transcription factor (WRKY28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237777.20.0WRKY transcription factor 32
RefseqXP_006573140.10.0WRKY transcription factor 32 isoform X1
RefseqXP_028231470.10.0probable WRKY transcription factor 57
RefseqXP_028231479.10.0probable WRKY transcription factor 57
SwissprotQ9C9832e-74WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A445LZF10.0A0A445LZF1_GLYSO; Putative WRKY transcription factor 57 isoform A
TrEMBLI1J5Y50.0I1J5Y5_SOYBN; Uncharacterized protein
STRINGGLYMA01G06870.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-69WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]