PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G045500.1.p

Common Name

GLYMA_01G045500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 386aa MW: 40166.5 Da PI: 7.2557

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G045500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.8	3.1e-41	65	193	2	130
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Glyma.01G045500.1.p 65 PPKRSSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPsh 154 789******************************************************************999878888888886666633 PP TCP 89 ...............kaaksaakskksqksaasalnlakesrakarararertrekm 130 + + ++ a+ r+ra+ + +m Glyma.01G045500.1.p 155 yfrgnyfnpstfstsA------------------AAASAAAVAQLRSRAEWDRNMSM 193 3333222222222220..................22222233333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.7E-40	70	233	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.683	71	125	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MELEADHQNG IRSRPNFPLQ LLEKKDVDDV TEQPCSTTSV VTTAAATITS GNNDLHVAEQ 60 SKKPPPKRSS TKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP 120 AVIAATGTGT IPANFTSLNI SLRSSGSTMS APSHYFRGNY FNPSTFSTSA AAASAAAVAQ 180 LRSRAEWDRN MSMVMEDSRR SMLENTSSIS AILNFNPMGN VNVIQQAKQE LREESAAAGG 240 GGSLDSVASD SDGSLGRKRR PEQELSQMGS YLIQSSTGSL PSSHASNTAA FWMVAGHGNQ 300 AMSGGGGSDG SSDNPIWAIP SVGNSGVYRG AMSAPGGIHF MNFASPMNLI PGAQLGSAMV 360 GGGSGGGNSG SQLLSESNLG SACGP*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MELEADHQNG IRSRPNFPLQ LLEKKDVDDV TEQPCSTTSV VTTAAATITS GNNDLHVAEQ  60
SKKPPPKRSS TKDRHTKVDG RGRRIRMPAA CAARVFQLTR ELGHKSDGET IEWLLQQAEP  120
AVIAATGTGT IPANFTSLNI SLRSSGSTMS APSHYFRGNY FNPSTFSTSA AAASAAAVAQ  180
LRSRAEWDRN MSMVMEDSRR SMLENTSSIS AILNFNPMGN VNVIQQAKQE LREESAAAGG  240
GGSLDSVASD SDGSLGRKRR PEQELSQMGS YLIQSSTGSL PSSHASNTAA FWMVAGHGNQ  300
AMSGGGGSDG SSDNPIWAIP SVGNSGVYRG AMSAPGGIHF MNFASPMNLI PGAQLGSAMV  360
GGGSGGGNSG SQLLSESNLG SACGP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.12987	0.0	flower\| leaf\| pod

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G045500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028230682.1	0.0	transcription factor TCP14-like
TrEMBL	K7K1T1	0.0	K7K1T1_SOYBN; Uncharacterized protein
STRING	GLYMA01G05410.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80
Representative plant	OGRP2699	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-47	TCP family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G045500.1.p