PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G043300.1.p
Common NameGLYMA_01G043300, LOC100797911
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 510aa    MW: 56113.3 Da    PI: 6.3656
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G043300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31196255159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Glyma.01G043300.1.p 196 MNDGCQWRKYGQKMAKGNPCPRAYYRCTASpSCPVRKQVQRCAEDMSILITTYEGTHNHP 255
                          58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-32182257IPR003657WRKY domain
SuperFamilySSF1182901.57E-27189257IPR003657WRKY domain
PROSITE profilePS5081128.736191257IPR003657WRKY domain
SMARTSM007742.7E-37196256IPR003657WRKY domain
PfamPF031064.5E-27197255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MKRSYTVLVM EDNDFLDSNG DEEIDVKDQN LESAKGEKGE TREENKMLEF YGILHHDKPD  60
DATNAKGVFS HIEENEESEL VSLSLGISIS KGKPSKNEKM INNGIEKRED EDVHKRLVLG  120
LDINLDPVDQ DELAANNSTP ESSFGEGGKE DEPTEMWPPS KVSKTMKSED KSEASPHYQP  180
KKTRVSIRAR CDTQTMNDGC QWRKYGQKMA KGNPCPRAYY RCTASPSCPV RKQVQRCAED  240
MSILITTYEG THNHPLPMSA TAMACTTSAA ASMLQSPSLS SQHGLVDSAI SSIINSSAAN  300
YYNPNNALNF STHQVSRPNQ FYFSNSSIST LNSHPTITLD LTAPPTSSNS SFTHMPKYSS  360
TNLNFSSGFS PLHSSMPQSP WSSYNYFNSG TLSQNRKHGG NYLLNTGNQN QPHSLGNLHQ  420
PIYMRSNTIS QHSLPDPIVA ATKAITSNPK FQSALATALT TYVGNEAGGG RLRENHVLES  480
AELMNLKLCS ENSIGNSSIV QLPLLEQWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21183257174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G043300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-102AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617466.10.0probable WRKY transcription factor 61
RefseqXP_028230555.10.0probable WRKY transcription factor 61
TrEMBLA0A445LYN10.0A0A445LYN1_GLYSO; Putative WRKY transcription factor 72 isoform A
TrEMBLI1J5L70.0I1J5L7_SOYBN; Uncharacterized protein
STRINGGLYMA01G05050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.15e-53WRKY DNA-binding protein 61