PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G041700.2.p
Common NameGLYMA_01G041700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 315aa    MW: 36000.6 Da    PI: 4.3226
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G041700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-1955108356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  Glyma.01G041700.2.p  55 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 108
                          56689***********************************************98 PP
2HD-ZIP_I/II1314.7e-4255146293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+
  Glyma.01G041700.2.p  55 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKGDYESLVQENDKLKAEV 144
                          9**************************************************************************************999 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Glyma.01G041700.2.p 145 NS 146
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1946112IPR009057Homeodomain-like
PROSITE profilePS5007117.37850110IPR001356Homeobox domain
SMARTSM003891.5E-1752114IPR001356Homeobox domain
CDDcd000861.36E-1753111No hitNo description
PfamPF000462.4E-1655108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-2057117IPR009057Homeodomain-like
PRINTSPR000314.7E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000314.7E-690106IPR000047Helix-turn-helix motif
PfamPF021835.0E-18110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVVVVWWGWF SGSKSVVDFE NVNGSRVTDR PFFQALEKEE NCDEDYEGCF HQPGKKRRLT  60
SEQVQFLERN FEVENKLEPE RKVQLAKELG LQPRQVAIWF QNRRARFKTK QLEKDYGVLK  120
ASYDRLKGDY ESLVQENDKL KAEVNSLESK LILRDKEKEE NSDDKSSPDD AVNSSPHNNK  180
EPIMDLLISK NATTSENGTE VSTLPLPIMV TCKQEDANSA KSDVLDSDSP HCTDYGNHPS  240
SFVEPADSSH AFEPEDHSED FSQDEEDNLS ENFLTLPSSC CLPKVEEPCY DDPPENSCNF  300
GFHVEDQTFC FWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARFKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.346410.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G041700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1842780.0AF184278.1 Glycine max homeodomain-leucine zipper protein 57 (Hdl57) mRNA, complete cds.
GenBankBT0941970.0BT094197.1 Soybean clone JCVI-FLGm-24N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574472.10.0homeodomain-leucine zipper protein 57 isoform X1
RefseqXP_028193699.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A445LYM20.0A0A445LYM2_GLYSO; Homeobox-leucine zipper protein HAT5 isoform B
TrEMBLI1J5K30.0I1J5K3_SOYBN; Uncharacterized protein
STRINGGLYMA01G04890.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-45homeobox 1