PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G039200.2.p
Common NameGLYMA_01G039200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 265aa    MW: 28888.2 Da    PI: 6.8082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G039200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10147194455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Glyma.01G039200.2.p 147 SHSLAERARREKISERMKILQDIVPGC----NKVIGKALVLDEIINYIQSLQ 194
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.59E-10141198No hitNo description
SuperFamilySSF474591.44E-17141211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17143211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-8147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPAAMMNGG ANPTSYHLSE IWQFPPPNAP DELGLRRPHF THGFADFAPD PTRDAVPGRD  60
PASIAQKKRR DASAEEEESA KGASTTNAVN EGGGVGDGKR VKTSESGKGE GETSSGKLAE  120
QSGKPPSEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDIV PGCNKVIGKA  180
LVLDEIINYI QSLQRQVEFL SMKLEAVNSR LAPRIEVFPP KDFDQQTFDT TGMPFASQAT  240
REYSRGSSPE WLHMQVGGGY ERAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.210380.0cotyledon| flower| hypocotyl| leaf| pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G039200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628143.10.0transcription factor BHLH094
SwissprotQ69WS31e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLI1J5H60.0I1J5H6_SOYBN; Uncharacterized protein
STRINGGLYMA01G04610.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-85BIG PETAL P