PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G020500.1.p | ||||||||
Common Name | GLYMA_01G020500, LOC100795778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25595.2 Da PI: 8.3108 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.4 | 1.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s Glyma.01G020500.1.p 9 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYAS 59 69***********************************************86 PP | |||||||
2 | K-box | 73.4 | 6.5e-25 | 80 | 170 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + e++ + +q+e++ L+++++nLq+++R+l+Ge+L Ls+++Lq Le+qLe l+ +R kK+++l+++i+el +k + + +en +L kk Glyma.01G020500.1.p 80 MNPESEVKFWQREAEILRQQLQNLQENHRQLMGEQLYGLSVRNLQDLENQLELNLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKK 169 367999*********************************************************************************998 PP K-box 98 l 98 + Glyma.01G020500.1.p 170 V 170 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.992 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.45E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-23 | 82 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.406 | 86 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLVIFSS TGKLYEYAST 60 SMKSIIERYN TCKEEHHRQM NPESEVKFWQ REAEILRQQL QNLQENHRQL MGEQLYGLSV 120 RNLQDLENQL ELNLQGVRMK KEQILKDEIQ ELNRKGNLIF QENVELYKKV FGTTDMATTS 180 RNAFVPLSYG MHAAGGNPQE LVQLQLCQPE QEVCETSDTA TK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-22 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 2e-22 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 2e-22 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 2e-22 | 1 | 83 | 1 | 83 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G020500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517221.1 | 1e-165 | MADS-box transcription factor 23 | ||||
Refseq | XP_028228189.1 | 1e-165 | MADS-box transcription factor 23-like | ||||
Swissprot | Q9SZJ6 | 7e-89 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | K7K1C4 | 1e-163 | K7K1C4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G02525.1 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 9e-84 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G020500.1.p |
Entrez Gene | 100795778 |
Publications ? help Back to Top | |||
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