PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G005000.1.p
Common NameGLYMA_01G005000, LOC100809761
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 351aa    MW: 39011.8 Da    PI: 7.2889
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G005000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08130151426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C+ f++ G C+ Gd C FaHg
  Glyma.01G005000.1.p 130 VACPEFRK-GNCRKGDACEFAHG 151
                          68******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.48483115IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-6126152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197127153IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-6130151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5132153IPR000571Zinc finger, CCCH-type
SMARTSM0035614161184IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643161185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMLGEHHRGN PTVLVPPWPA HDDPTAEMYS AFLTNDVNAG EYSPYHLQEA LTALQRFLPS  60
NETDADSDSS EAAQPDAAVD AYTCDHFRMY EFKVRRCARG RSHDWTECPY AHPGEKARRR  120
DPRRFHYSGV ACPEFRKGNC RKGDACEFAH GVFECWLHPA RYRTQPCKDG TSCRRRVCFF  180
AHTPEQLRVL PMQSPRSVAN SSESYDGSPM RQVSLSSAAA AAFMSSPAAS LSPPESPPSV  240
NEMVASLRNL QLGKMKSMPH NRNVSVGSPR GSVLRPGFLS LPTTPTQQPV RSGVKCFDVW  300
DESFEEEPVM ERVESGRGIR AKMFEKLSKE NSLDASASPP DLGWVSELVK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.90010.0leaf| somatic embryo| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G005000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516267.10.0zinc finger CCCH domain-containing protein 20
SwissprotO821991e-132C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLI1J4E80.0I1J4E8_SOYBN; Uncharacterized protein
STRINGGLYMA01G00820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-133C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]