PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca115125G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 60aa MW: 6709.88 Da PI: 9.7483 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 71 | 2.4e-22 | 2 | 60 | 28 | 86 |
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 ++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq Gh_Sca115125G01 2 AHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQQQ 60 68*******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.894 | 1 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-21 | 2 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MAHFAAVHKV YGASNASKML QRIPVHKRLD AVVTLCYEAL ARVRDPVYGC VGHLFTLQQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-20 | 4 | 60 | 40 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-20 | 4 | 60 | 40 | 96 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489773.1 | 4e-37 | PREDICTED: LOB domain-containing protein 19 | ||||
Refseq | XP_016710129.1 | 3e-37 | PREDICTED: LOB domain-containing protein 19-like | ||||
Refseq | XP_017614887.1 | 3e-37 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 4e-30 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A0B0MXZ8 | 8e-36 | A0A0B0MXZ8_GOSAR; LOB domain-containing 19-like protein | ||||
TrEMBL | A0A0D2SGW6 | 9e-36 | A0A0D2SGW6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LAF3 | 8e-36 | A0A1U8LAF3_GOSHI; LOB domain-containing protein 19-like | ||||
TrEMBL | A0A2P5RFT1 | 9e-36 | A0A2P5RFT1_GOSBA; Uncharacterized protein | ||||
TrEMBL | A0A2P5XPI9 | 8e-36 | A0A2P5XPI9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G091600.1 | 1e-36 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 1e-32 | LOB domain-containing protein 19 |