PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca101437G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 73aa MW: 8245.26 Da PI: 10.1549 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20 | 1.2e-06 | 51 | 72 | 4 | 25 |
HHHHHHHHHHHHHHHHHHHHHC CS HLH 4 ahnerErrRRdriNsafeeLre 25 +h e+Er+RR+++N++f Lr Gh_Sca101437G01 51 NHVEAERQRREKLNQRFYALRA 72 799***************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.086 | 47 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.05E-6 | 47 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-6 | 50 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MKSSGGAGDS DNSDIEASVV KEAECVKPLE PEKKPRKRGR KPANGREEPL NHVEAERQRR 60 EKLNQRFYAL RAV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 40 | KKPRKRGRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers, and seedlings. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012439320.1 | 6e-43 | PREDICTED: transcription factor MYC2-like isoform X1 | ||||
Refseq | XP_012439321.1 | 5e-43 | PREDICTED: transcription factor MYC2-like isoform X2 | ||||
Refseq | XP_012439322.1 | 5e-43 | PREDICTED: transcription factor MYC2-like isoform X3 | ||||
Refseq | XP_016736690.1 | 6e-43 | PREDICTED: transcription factor MYC2 | ||||
Refseq | XP_016736787.1 | 6e-43 | PREDICTED: transcription factor MYC2-like | ||||
Refseq | XP_017638177.1 | 5e-43 | PREDICTED: transcription factor MYC2-like | ||||
Swissprot | Q9FIP9 | 2e-31 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | A0A0D2T538 | 1e-41 | A0A0D2T538_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NCF0 | 1e-41 | A0A1U8NCF0_GOSHI; transcription factor MYC2 | ||||
TrEMBL | A0A1U8NCN1 | 1e-41 | A0A1U8NCN1_GOSHI; transcription factor MYC2-like | ||||
TrEMBL | A0A288F8J6 | 1e-41 | A0A288F8J6_GOSHI; MYC transcription factor 3 (Fragment) | ||||
STRING | Gorai.008G226300.1 | 2e-42 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6611 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 3e-17 | bHLH family protein |