PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca075899G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 161aa    MW: 17827.1 Da    PI: 9.3615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca075899G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18555155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Gh_Sca075899G01  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                     59*****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-22564No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
PfamPF008471.5E-11655IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32663IPR001471AP2/ERF domain
SMARTSM003804.2E-39669IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-20664IPR016177DNA-binding domain
PRINTSPR003672.3E-10718IPR001471AP2/ERF domain
PRINTSPR003672.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVQTKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPVPNSGSD DNGSSPLPAE TLSEFLGAKL RKCCKDQSPS LTCLRLDTDN AHIGVWQKRA  120
GSRSSSNWVM RVELGNKKTT MEDGAASSSS ELSHMVEETE A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17268169ATERF1
3gcc_A6e-17268169ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704038.11e-117PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_017645113.11e-117PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9585e-70SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A1U8KSR61e-116A0A1U8KSR6_GOSHI; ethylene-responsive transcription factor SHINE 2-like
STRINGGorai.001G033200.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.12e-65ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]