PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca068518G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9392.54 Da PI: 10.65 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.5e-14 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l +v+++G+g+Wk+I r R+ ++k++w+++ Gh_Sca068518G01 5 KQKWTAEEEEALRAGVAKYGKGNWKLIQRDPElspflFARSNIDLKDKWRNL 56 79*****************************9999*978***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.901 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-16 | 2 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.45E-20 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MGNPKQKWTA EEEEALRAGV AKYGKGNWKL IQRDPELSPF LFARSNIDLK DKWRNLSGGP 60 GGHGSREKSR ASKPKPSSDG SQGAVV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23462 | 1e-144 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617121.1 | 2e-57 | PREDICTED: telomere repeat-binding factor 4-like | ||||
Swissprot | F4I7L1 | 8e-26 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
Swissprot | Q8W119 | 7e-26 | SMH4_MAIZE; Single myb histone 4 | ||||
TrEMBL | A0A0B0MK94 | 5e-56 | A0A0B0MK94_GOSAR; Histone H1 | ||||
STRING | Gorai.001G013000.1 | 2e-56 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2321 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 3e-28 | MYB_related family protein |
Publications ? help Back to Top | |||
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