PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca032200G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 242aa MW: 27024.1 Da PI: 5.6111

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca032200G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.4e-37	31	86	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++ Gh_Sca032200G01 31 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKGRRG 86 68**************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	15	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.313	31	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.0E-32	31	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MFAISESMLQ CAPRPMLAID RNWKSNAELA PNCPRCASAN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTKGGS LRNVPVGGGC RKGRRGKSNR VDKNGAQVST NYSKNLTSFG THQEHMMGAT 120 TSHGDTGNQP GPATTTGSDI DLAVIFAQFL NQSTSSDQPE IILTQEWPNE GMDPWSCLEQ 180 DTNSQNDSSM ELPVVHTIPE SYNMLQEMPQ VEQHRKHNSV EELLESDEIN AFGLQNLLAD 240 EM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.21033	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016733900.1	0.0	PREDICTED: dof zinc finger protein DOF1.2-like
TrEMBL	A0A2P5WZU0	0.0	A0A2P5WZU0_GOSBA; Uncharacterized protein
STRING	Gorai.009G252800.1	1e-180	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	8e-37	Dof family protein