PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca031918G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 287aa MW: 32227.9 Da PI: 9.193

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca031918G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.6	2.5e-14	110	187	10	87
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 ++++ l +p +f++eh +k e++ ++l ++sg++W +++ rk +++ +l +GW F+++n+ ++gD++ F+l+++ Gh_Sca031918G01 110 HTTNFKLAIPCNFVKEHLMK--EHFSVILCNSSGKTWIATFKQRKIGKKltSYLVAGWGTFARENNNQVGDVCAFELINN 187 4567889********877..5668***********887766667788999******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-18	94	199	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.0E-19	94	199	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.20E-18	95	198	No hit	No description
SMART	SM01019	4.3E-7	97	201	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.167	101	201	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.7E-12	110	195	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MQYPYTRDNH SQSDEILEQN IEESEDDDTT EILEVISPSR KIREELQSPC PRSHKMMIST 60 NSAIKTKTVC NGKKVENTRK FKALERVRNT FKSDPFFLLV IQPSYVALGH TTNFKLAIPC 120 NFVKEHLMKE HFSVILCNSS GKTWIATFKQ RKIGKKLTSY LVAGWGTFAR ENNNQVGDVC 180 AFELINNSID ISFKVVIYQG QHANGHQSLA ATDVFHLVKL KAPTCASRSS SEPPVKHKAP 240 SYASQGCPEP LTALEKAKAF QMAGAFKSEN PFFVVVLQPS YVHGNKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638182.1	1e-160	PREDICTED: B3 domain-containing protein Os03g0619600-like
TrEMBL	A0A0D2MI58	1e-93	A0A0D2MI58_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2NV50	8e-95	A0A0D2NV50_GOSRA; Uncharacterized protein
STRING	Gorai.003G020000.1	2e-94	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14219	7	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31690.1	5e-09	B3 family protein