PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca005143G02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29116.8 Da PI: 8.5711 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1.1e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+ +++ +G g W+ +++ g++R+ +c++rw +yl Gh_Sca005143G02 14 KGAWTDWEDKILASYINVHGEGKWRNLPKRAGLKRCCRSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Gh_Sca005143G02 67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 78999*****************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.736 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.384 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.65E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGKSSCCSKE GLRKGAWTDW EDKILASYIN VHGEGKWRNL PKRAGLKRCC RSCRLRWVNY 60 LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKRTKAQA 120 SIKYPRPTIQ TKATGCSSKV MVPTQPSTSQ DIDELRDGKL YSTNNSQEMG GDIATVEAHN 180 GTQVLDSLKS DGGSNLLSFE INGLRKASDA KFEENHMQLL PFDKAMFEDW TTYPYLNDTA 240 ATGWDSLAFL IDTNDWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-21 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 13346189 | 1e-133 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF336284 | 1e-130 | AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642922.1 | 0.0 | PREDICTED: transcription factor TT2-like | ||||
TrEMBL | A0A346KJY0 | 0.0 | A0A346KJY0_GOSHI; GhTT2-2A-YM | ||||
STRING | Gorai.001G020500.1 | 1e-175 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM37233 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 8e-60 | MYB family protein |