PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca004760G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 27258.7 Da PI: 8.4171 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.6 | 5.3e-45 | 4 | 139 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrF Pt+eelv++yL+kk+e+k+ + +++vi+ vdiy+++PwdLp+ ++++ ++w+fF++r++++a+g r++r t+sgyWka Gh_Sca004760G01 4 MPPGFRFYPTEEELVSFYLHKKLEAKTdddlnHVMNRVIPVVDIYNFNPWDLPRfsdnLCHKDPEQWFFFIPRQESEARGGRPKRLTSSGYWKA 97 79************************988876555668**************9546654445677***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 tg+ v+s +++ +g+k+t+vfy+grap+g+ktdW m+ey+ Gh_Sca004760G01 98 TGSPGYVYSFNSRPIGVKRTMVFYNGRAPNGKKTDWKMNEYK 139 *****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-48 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.07 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-23 | 5 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEDMPPGFRF YPTEEELVSF YLHKKLEAKT DDDLNHVMNR VIPVVDIYNF NPWDLPRFSD 60 NLCHKDPEQW FFFIPRQESE ARGGRPKRLT SSGYWKATGS PGYVYSFNSR PIGVKRTMVF 120 YNGRAPNGKK TDWKMNEYKA IQDHVSLANA TTPPTLRQEF SLCRVYKKSK CLRSFDRRPP 180 GILKIGEPFP GLDNNQYINR FTQIGINDNS STKKDVVDDD EYAFWDVDGF WNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-34 | 3 | 168 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-34 | 3 | 168 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-34 | 3 | 168 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-34 | 3 | 168 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-34 | 3 | 168 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-34 | 3 | 168 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-34 | 3 | 168 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847247 | 0.0 | KC847247.1 Gossypium hirsutum NAC domain protein NAC70 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314212.1 | 1e-174 | NAC domain-containing protein 90-like | ||||
Refseq | XP_012468159.1 | 1e-174 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 6e-74 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1U8LJP9 | 1e-174 | A0A1U8LJP9_GOSHI; NAC domain-containing protein 90-like | ||||
STRING | Gorai.002G238300.1 | 1e-173 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10159 | 10 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-76 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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