PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca004718G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 233aa    MW: 25874.5 Da    PI: 8.4943
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca004718G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1870124256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq + Lee F+ n++++ +++e LA +l+L  rqV vWFqNrRa+ k
  Gh_Sca004718G01  70 RKKLRLTKEQSRLLEESFRLNHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSK 124
                      78889************************************************98 PP
2HD-ZIP_I/II117.19.8e-3870158190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+keq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr +
  Gh_Sca004718G01  70 RKKLRLTKEQSRLLEESFRLNHTLNPKQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 158
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-1955127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-1755124IPR009057Homeodomain-like
PROSITE profilePS5007117.0766126IPR001356Homeobox domain
SMARTSM003896.5E-1768130IPR001356Homeobox domain
CDDcd000862.61E-1669127No hitNo description
PfamPF000464.4E-1670124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003404.0E-22126169IPR003106Leucine zipper, homeobox-associated
PfamPF021837.5E-10126160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAVLPTGSSH LELTISVPGF ASSPSFPSSG DQGGCMVRDL DINQVPAEDE WITASMEDEE  60
ESCNNGAPPR KKLRLTKEQS RLLEESFRLN HTLNPKQKEA LALQLKLRPR QVEVWFQNRR  120
ARSKLKQTEM ECEYLKRWFG SLTEQNRRLQ REVEELRAMK VAPPTVISPH SCEPLPASTL  180
TMCPRCERVT TTTTAAIEKG SAKMTAATTP TATTLPSKVG TSALQSRPYS AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016701917.11e-170PREDICTED: homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX18e-85HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH388e-85HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1U8KHJ81e-169A0A1U8KHJ8_GOSHI; homeobox-leucine zipper protein HOX3-like
STRINGGorai.002G178800.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-68homeobox-leucine zipper protein 17