PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G2548

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 249aa MW: 26648.6 Da PI: 6.7755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G2548	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	144	181	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R ++i ++++ L++l+ + +K + a++L +A+ YI+ L Gh_D13G2548 144 RKEKIGDRINALQQLVSPF-----GKTDTASVLHEAMGYIRFL 181 567999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	132	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.26E-10	144	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.56E-5	144	186	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-8	146	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMAETEADHG FEGDQETATT TTTSSSFSQL LFGGGHDDDG DTLGPAQSFN YTCSSFAVKS 60 TPKMLCFGGC HPNDADIVLG KPAINAAPKA GLTCSDSSST SSGNNTKSMQ CRGAIVEAQP 120 TRRRTNKRSK VENPTTSGHA KVVRKEKIGD RINALQQLVS PFGKTDTASV LHEAMGYIRF 180 LHDQVQVLCS PYLQHPHDGE NNGGEESRKE LKSRGLCLVP VACTAHVENS NGADFWSPAT 240 MGNNVIIRQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	RRTNKRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465652.1	1e-161	PREDICTED: transcription factor bHLH113-like isoform X1
Swissprot	Q9LT67	3e-52	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A2P5RUG8	1e-160	A0A2P5RUG8_GOSBA; Uncharacterized protein
STRING	Gorai.013G048000.1	1e-160	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	2e-51	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]