PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G2262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YA | ||||||||
Protein Properties | Length: 315aa MW: 33897.3 Da PI: 7.4981 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.4 | 2.1e-32 | 173 | 229 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekk+ ksrkpylheSRh+hAlrR+RgsgGrF Gh_D13G2262 173 QEPVYVNAKQYQGILRRRQARAKAELEKKV-VKSRKPYLHESRHQHALRRARGSGGRF 229 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-35 | 171 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.949 | 172 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-28 | 174 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.1E-24 | 175 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 177 | 197 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.1E-24 | 206 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MQSNSEEGSQ LEPDVHGVHP TAVYSEPKWC NTSYGAISSG ARGVNSLNSS SMECTNASES 60 NDGQSLSNGA LNEEDDVNKE TQTTASSRAV GTGGQEHHNL QHVGSSMPAV RDEGLTQPPL 120 LELVGHSIAC ASNPYIDPLY GGMMAAYGHQ PMGYPPFVGM PHARMTLPIE MAQEPVYVNA 180 KQYQGILRRR QARAKAELEK KVVKSRKPYL HESRHQHALR RARGSGGRFA KKTDTNPGEE 240 KGSGSGPTLS SQSRSSSGSE PLQTDSNETW TSSLTQHDIH HVNGGSHYQK LGGNISNQAA 300 FYPVNGGQSF QKLKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-19 | 173 | 229 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9444 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 4e-36 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734596.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-1 isoform X1 | ||||
Swissprot | Q9LXV5 | 2e-86 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2P5SPN2 | 0.0 | A0A2P5SPN2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G251200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5946 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 1e-84 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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