PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1856
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 287aa    MW: 32478.8 Da    PI: 8.0853
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1856genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13104155155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i   A++++k+L+
  Gh_D13G1856 104 QRMTHITVERNRRKQMNQYLSLLRSLMPPS---YAQRGDQASIIGGAINFVKELE 155
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.29E-12102159No hitNo description
Gene3DG3DSA:4.10.280.109.0E-13102159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-16102169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.091103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-8109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAMEAVIFQQ DWFGYNGKDV LLGGNWSYGL GLGKEEENFC FEHIPGNQTS DTNNLVDGDH  60
RVSSSSQTSM APPLPHSSGP SAMGRRKRRR STKAPKNKEE MENQRMTHIT VERNRRKQMN  120
QYLSLLRSLM PPSYAQRGDQ ASIIGGAINF VKELEQRLQW LSGQKEVKEE RPKFDDFFTS  180
PQYSTPIGDI EVNVNERHAN LKIRWKRRPS LLFRLVSGLN AMRLTILHLN VTTAALIVLY  240
SLTLKVEDDC KLTTGDGIAS AVNQLLCRIE GDDDDDAMFN SFNSILP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589RKRRR
28590RKRRRS
3104115RMTHITVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6177931e-63JX617793.1 Gossypium hirsutum clone NBRI_GE63038 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667861.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A1U8HPD60.0A0A1U8HPD6_GOSHI; transcription factor bHLH94-like
STRINGGorai.013G204300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-67bHLH family protein