PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1759

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 356aa MW: 40326.4 Da PI: 8.8551

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1759	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.8	7.5e-52	8	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhPtdeel+ +yL kk++++++++ ++i++vdiyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk ++++ Gh_D13G1759 8 LPPGFRFHPTDEELILHYLMKKLSSSPFPV-SIIADVDIYKFDPWDLPDKAVFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKIIVASsmA 104 79**************************.89***********7777899**********************************97550 PP NAM 97 gel........vglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfykgr pkg kt+W+mheyrl Gh_D13G1759 105 --AgrggvfsnIGVKKALVFYKGRPPKGIKTNWIMHEYRL 142 ..355566778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-64	4	173	IPR003441	NAC domain
PROSITE profile	PS51005	60.305	8	173	IPR003441	NAC domain
Pfam	PF02365	8.8E-27	9	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MRLPHSSLPP GFRFHPTDEE LILHYLMKKL SSSPFPVSII ADVDIYKFDP WDLPDKAVFG 60 EKEWYFFSPR DRKYPNGARP NRAAGSGYWK ATGTDKIIVA SSMAAGRGGV FSNIGVKKAL 120 VFYKGRPPKG IKTNWIMHEY RLSQNPNSNN RSFKSKDCSM RLDDWVLCRI YNKSHALSST 180 STATNDQNQE EDEAEQFIRD ALLPALESPS SNNNTNLKLQ PQKSCSFSNL LDAMDYSMLS 240 SFLADNQCNT AGYESSSFGF RNFEQAPVGD TSRFPQKLPQ LTSSVVPAME NKLKRPYSSI 300 DQDYLEPPKK LISSCNHTKS TTQSDMTQSN FLNQSFFNHS LLPMPSFSIP RIEERF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MRLPHSSLPP GFRFHPTDEE LILHYLMKKL SSSPFPVSII ADVDIYKFDP WDLPDKAVFG  60
EKEWYFFSPR DRKYPNGARP NRAAGSGYWK ATGTDKIIVA SSMAAGRGGV FSNIGVKKAL  120
VFYKGRPPKG IKTNWIMHEY RLSQNPNSNN RSFKSKDCSM RLDDWVLCRI YNKSHALSST  180
STATNDQNQE EDEAEQFIRD ALLPALESPS SNNNTNLKLQ PQKSCSFSNL LDAMDYSMLS  240
SFLADNQCNT AGYESSSFGF RNFEQAPVGD TSRFPQKLPQ LTSSVVPAME NKLKRPYSSI  300
DQDYLEPPKK LISSCNHTKS TTQSDMTQSN FLNQSFFNHS LLPMPSFSIP RIEERF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-73	3	173	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-73	3	173	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-73	3	173	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-73	3	173	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-73	3	173	15	168	NAC domain-containing protein 19
3swm_B	6e-73	3	173	15	168	NAC domain-containing protein 19
3swm_C	6e-73	3	173	15	168	NAC domain-containing protein 19
3swm_D	6e-73	3	173	15	168	NAC domain-containing protein 19
3swp_A	6e-73	3	173	15	168	NAC domain-containing protein 19
3swp_B	6e-73	3	173	15	168	NAC domain-containing protein 19
3swp_C	6e-73	3	173	15	168	NAC domain-containing protein 19
3swp_D	6e-73	3	173	15	168	NAC domain-containing protein 19
4dul_A	6e-73	3	173	12	165	NAC domain-containing protein 19
4dul_B	6e-73	3	173	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022718970.1	0.0	NAC transcription factor 47-like
Swissprot	Q84TD6	1e-112	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A2P5QWE5	0.0	A0A2P5QWE5_GOSBA; Uncharacterized protein
STRING	EOY10731	1e-179	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7723	25	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-109	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]