PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1636
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 763aa    MW: 82042.8 Da    PI: 6.2765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1636genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.8e-33274331260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g Hnh+k
  Gh_D13G1636 274 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHPK 331
                  7****************************************.***************85 PP
2WRKY101.64.5e-32492550159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver++++ k+v +tY g+Hnhe
  Gh_D13G1636 492 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHNLKCVLTTYDGKHNHE 550
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-29264332IPR003657WRKY domain
PROSITE profilePS5081123.548268332IPR003657WRKY domain
SuperFamilySSF1182904.05E-26269332IPR003657WRKY domain
SMARTSM007743.4E-37273331IPR003657WRKY domain
PfamPF031062.5E-25274330IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-35477552IPR003657WRKY domain
SuperFamilySSF1182901.31E-27485552IPR003657WRKY domain
PROSITE profilePS5081136.965487552IPR003657WRKY domain
SMARTSM007742.0E-36492551IPR003657WRKY domain
PfamPF031064.6E-24493550IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MDHNVTVFTN RQESVTADDG NGELETVNHG CGGGDGDGDG GGDGGKSGVS IAERRAATCG  60
FKVDKINTAR FRASTSPLAS PPVRLPYLTI PPGISPTALL DSPIMLPNAQ GSPTTGTFPV  120
PTLNQDGQVL SVSNTDRGSK IAPSFTFKPQ SMDSQPSFSS LEDQVSSSLN LVQRAEVDYQ  180
PLVHLGTPLD FEFPAEFSKE ATSRSFAADS VAEVKVLNNI VNDNVNLGCH PSELAGDRTS  240
MQKVPFNGQD VSTNLSESDP KGTNTTAGTA RTSEDGYNWR KYGQKQVKGS EYPRSYYKCT  300
HPNCQVKKKV ERSLDGQITE IIYKGAHNHP KPQPCRPSLG SSSSSNEMSE SAEGNGTCVK  360
IESGLIWKNT QAGSKDIKLG SDLRADGLER TSSTSVITDL SDPLSTAQGK SVGVFESADT  420
PEFSSTLASN DDDNDDRATQ GSISLCDDAA NDDESESKRR KTESCSTEMN VASGAIREPR  480
VVVQIESEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTS PGCPVRKHVE RASHNLKCVL  540
TTYDGKHNHE VPAARSSSHV NTSACNLPPT VPNSQAALAL SRNSHVLKPE TPIQDIAPPF  600
DRKPEFKNEY MRPSFLGDFS NEMKLGTASL ASVYQMKFPS LQKAIPYGTF GVNPNCIATR  660
SSGSIASTVP NFPISMPLNL PTSANLSLAG FDINNGGKPA APIHSFLPGQ QFKENTARFH  720
GIKQELKDDN HYDPCLPIVD HANATSSSSP SVYRQQATGN FPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34262553178Probable WRKY transcription factor 4
2lex_A5e-34262553178Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3311710.0AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464728.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_012464729.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A0D2U3960.0A0A0D2U396_GOSRA; Uncharacterized protein
STRINGGorai.013G179400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17370611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-108WRKY DNA-binding protein 2