PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1418
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 562aa    MW: 61178.5 Da    PI: 6.8505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1418genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-32215272260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gh_D13G1418 215 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 272
                  8****************************************.***************85 PP
2WRKY106.51.3e-33379437159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+CtsagCpv+k++er+++dpk+v++tYeg+Hnh+
  Gh_D13G1418 379 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHIERASHDPKAVITTYEGKHNHD 437
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-27208273IPR003657WRKY domain
PROSITE profilePS5081123.525209273IPR003657WRKY domain
SuperFamilySSF1182903.92E-25211273IPR003657WRKY domain
SMARTSM007744.1E-34214272IPR003657WRKY domain
PfamPF031061.6E-24215271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37364439IPR003657WRKY domain
SuperFamilySSF1182904.71E-29371439IPR003657WRKY domain
PROSITE profilePS5081138.939374439IPR003657WRKY domain
SMARTSM007741.3E-38379438IPR003657WRKY domain
PfamPF031068.2E-26380437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEEQILASSS AAASATQHDL SASAASSGAR YKLVAPAKLP ISRSACITIP PRLSPSSFLE  60
SPVLLSDVKA EPSPTTGSLI KPQAVHGSVN SSTYSVTAAC SNAFDERNPS CFEFRPHPRS  120
NLAPADLNHL RSEQSLQIQG QYQTISYNSS ALVKSEMAGS SNELSLSVPF HTATSVASAP  180
VEVDVDELNQ SGNSNSGMQS GQTDHRVSGS STISDDGYNW RKYGQKHVKG SEFPRSYYKC  240
THPNCEVKKL FERSHDGQIT EIIYKGTHDH PKPQPSRRYS SGNTMSVQEE RFDKVPPLTG  300
RDDKSSNMYG QMAHSIEPNN TADSSPVTAN DDNVDDVDDD DPFSKRSRKM DGGIDIIPVV  360
KPIREPRVVV QTLSEVDILD DGYRWRKYGQ KVVRGNPNPR SYYKCTSAGC PVRKHIERAS  420
HDPKAVITTY EGKHNHDVPT AKTSSHDIAG PVTVNALSRI RSEENDAISL DLGVGISPAP  480
ENSSNEHQQL HSEVVQSHHQ TGGSSFKLHQ VTPMTAYYGV PNGGMNQYGS REAPSEGRTV  540
DITPLNHSYA YSQTMGRILT GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37200439377Probable WRKY transcription factor 4
2lex_A4e-37200439377Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.76450.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697620.0KF669762.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462907.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2U1W10.0A0A0D2U1W1_GOSRA; Uncharacterized protein
STRINGGorai.013G155500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein