PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G1294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 30485.7 Da PI: 4.9222 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.7 | 9.5e-12 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed +l+ ++ ++G +W+ +++ g+ R++k+ ++rw +yl Gh_D13G1294 9 KGPWSRDEDHKLIAYIVRYGIWNWNEMPKHAGLQRSGKSSRLRWMNYL 56 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4e-15 | 62 | 105 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e +v + k lG++ W++Ia++++ Rt++++k++w++ Gh_D13G1294 62 RGNFTREEEETIVGLQKILGNR-WSAIAARLP-QRTDNDIKNYWNS 105 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.383 | 4 | 56 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.46E-25 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-7 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-10 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.24E-6 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 23.207 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-12 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-13 | 62 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.65E-9 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-24 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MVRQPYLKKG PWSRDEDHKL IAYIVRYGIW NWNEMPKHAG LQRSGKSSRL RWMNYLRPNI 60 RRGNFTREEE ETIVGLQKIL GNRWSAIAAR LPQRTDNDIK NYWNSRLKKR VIVENNNSAS 120 SPTETKSSVE ENSSDADLEN NNSASSPTET KSSVEENSSD ADSSMMLGIF FDSDTRGMHD 180 FAEIAADTTF FPSGSDLSVA VDDHYSMAMD NYLVSYWEIL SFLEQPQMIE GLDCEAISQN 240 SQQWHSHNQQ YYDPLHDFWV NPLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 5 | 111 | 3 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016675131.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A2P5VTU2 | 0.0 | A0A2P5VTU2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G143100.1 | 1e-167 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17382 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 7e-49 | myb domain protein 15 |