PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 307aa MW: 33434.9 Da PI: 6.8722 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.6 | 5.4e-33 | 166 | 223 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ Gh_D13G0837 166 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 223 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-34 | 150 | 224 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-28 | 157 | 223 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.689 | 160 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-38 | 165 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 166 | 223 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEDKEGLDPA GTEFKSDSSS SWTLAGPDSV SDSINYFFDR ESSILSEFGW NILQLDHADE 60 IERFGELDRT DASRGLAGNF SGSQSQSCGA AGGSCSGAAS NPVGSAEVPT SNPSVSSSSS 120 EDPPEKSTGF GGKPPEIPSK VRKKGQKRIR QPRFAFMTKS EVDHLEDGYR WRKYGQKAVK 180 NSPFPRSYYR CTNSKCTVKK RVERSSEDPT IVITTYEGQH CHHSVGFPRG GLISHEAAFA 240 GQFTPGVSQF YYSQGVQLHR GISPSTTQSQ QLPIEVRESR ALPEPTSQLP KDEGLLGDIV 300 PPGMRKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 155 | 222 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 155 | 222 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438480 | 0.0 | KM438480.1 Gossypium aridum WRKY117 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703583.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Refseq | XP_016703584.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 3e-77 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A1U8KRF0 | 0.0 | A0A1U8KRF0_GOSHI; probable WRKY transcription factor 57 | ||||
STRING | Gorai.013G092300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4995 | 27 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 4e-71 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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