PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0759
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 89aa    MW: 9895.17 Da    PI: 6.7905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0759genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-0717561554
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +i +  ++L++l+P++++ +s K s + +L+++ +YI++L
  Gh_D13G0759 17 QITHLVFKLQQLIPELCARRSHKASASKVLQETSDYIRNL 56
                 6777889********88*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-81674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-51656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-81771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGRRSGSGV SSISDDQITH LVFKLQQLIP ELCARRSHKA SASKVLQETS DYIRNLHKEV  60
EDLSDRLSQL LASIDTDNDQ AAIVRSLLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704558.17e-58PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX18e-30PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8KU742e-56A0A1U8KU74_GOSHI; transcription factor PRE6-like
TrEMBLA0A2P5QFE12e-56A0A2P5QFE1_GOSBA; Uncharacterized protein
STRINGGorai.013G083800.16e-55(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-31bHLH family protein