PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0393
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 625aa    MW: 71267.3 Da    PI: 9.5407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0393genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.8e-20473522255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Gh_D13G0393 473 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDKAAIDFRG 522
                  59*******.**********82....48**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5092214.34265251IPR006634TRAM/LAG1/CLN8 homology domain
SMARTSM007245.1E-4665251IPR006634TRAM/LAG1/CLN8 homology domain
PfamPF037987.4E-3566241IPR006634TRAM/LAG1/CLN8 homology domain
CDDcd000183.52E-33472530No hitNo description
SMARTSM003801.2E-37473536IPR001471AP2/ERF domain
PfamPF008479.2E-14473522IPR001471AP2/ERF domain
PROSITE profilePS5103225.211473530IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32473530IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22473531IPR016177DNA-binding domain
PRINTSPR003671.5E-11474485IPR001471AP2/ERF domain
PRINTSPR003671.5E-11496512IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MESSIWSRNA KPDVCHFLVA VHFALGFVVA RFFLDKFIFR RLAIWLSSNG YAPLKMNEAT  60
QAKIAKCSES MWKLAYYATV ETFILKITYH EPWFTDTKQY FRGWPDQELK LSLSLFYMCQ  120
CGFYIYSIAA LLTWETRRKD FAVMMSHHVI TVILIGYSYI TSFFRIGSII LALHDASDVF  180
LEAAKVFKYS ERELGASVCF GLFAISWLLL RLIFFPFWVI KTSSLTILYE VPTVFLRNAW  240
ILRMMIRQKI SFILVRLLPA MLSPEEIICF RESTWNGMRA IEGFDVLRRS CRRRLSRKLP  300
ATYGNNKQSN VTYGNSEEKK YLKKRSQILK GQISVQVATK LMQKPMKRQR LTPVPPPSVH  360
RLSPEHEISI MVAALKNVVA GYTPTSTSAV SVSAVDIPSD FVPLVTSTVS TAGISRDFDD  420
ALFQANEVMD KCHVCRFDGC LGCNLFPPSH QEDQTVTTTA TTMFSKPKRV KKNYRGVRQR  480
PWGKWAAEIR DPRRAARVWL GTFNTAEEAA RAYDKAAIDF RGPRAKLNFP FPDRSHSDGD  540
VTTSAAAAAT TASVVVFDQE NSGAFNLNIG KESEIRIGSE FWDGMGEDEI QEWMKMMTTD  600
FDWDNNNNNK YFSDSAMTMG NASSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23472531464ATERF1
3gcc_A5e-23472531464ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.104840.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0801740.0JQ080174.1 Gossypium hirsutum longevity assurance protein 1-like protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-34redox responsive transcription factor 1