PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0071 | ||||||||
Common Name | WRKY106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 35018.9 Da PI: 7.2095 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.3 | 1.6e-23 | 133 | 194 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 +Dg+ WrKYGqK++ +s++prsY+rCt++ gC++ k+v+r +ed+ ++ +tY g H+++ Gh_D13G0071 133 QDGHGWRKYGQKDILNSKHPRSYFRCTHKydqGCRAIKQVQRLEEDGsQMYRTTYIGAHTCK 194 7***************************99999**********999736899********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-23 | 119 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.259 | 127 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-22 | 129 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-34 | 132 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-24 | 133 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGTLSAWSEN LSTKKKKKVI KQLVEGQDYA NQLQILLNNN NYNPSQQQQT EHHLSSTKDQ 60 LVDKILSSFN QTLAELTSVN VSSSHNQTGS NDDQLVKSED CSESRRPRPK GKRGCYKRKR 120 AEQARTVVSD TTQDGHGWRK YGQKDILNSK HPRSYFRCTH KYDQGCRAIK QVQRLEEDGS 180 QMYRTTYIGA HTCKNHSFKA PWIMSDSEFR GTCMAPIERH DDRRSNLAPT TPVVKQETKE 240 EMSGTPDDVT DLDSAMWKDF MEFEYCSEPD VMISNVYSCT GIKFRNFEMD FVNGFEFDGS 300 DECVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-23 | 126 | 194 | 2 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.6768 | 0.0 | leaf| ovule| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 31072965 | 0.0 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669780 | 0.0 | KF669780.1 Gossypium hirsutum WRKY transcription factor 106 (WRKY106) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314364.1 | 0.0 | probable WRKY transcription factor 54 | ||||
TrEMBL | A0A1U8MRB4 | 0.0 | A0A1U8MRB4_GOSHI; probable WRKY transcription factor 54 | ||||
STRING | Gorai.013G008300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4061 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-37 | WRKY DNA-binding protein 70 |
Publications ? help Back to Top | |||
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