PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2820
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23362.4 Da    PI: 4.84
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2820genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.25.2e-191859445
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 + +s rqvtfskRrng++KKA+E++  C+a++ +i+fs++gk
  Gh_D12G2820 18 QKESSRQVTFSKRRNGLFKKASEICLPCGANIGIIVFSPKGK 59
                 56899***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-26766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.96767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-25877IPR002100Transcription factor, MADS-box
CDDcd002651.52E-31875No hitNo description
PRINTSPR004042.4E-16929IPR002100Transcription factor, MADS-box
PfamPF003193.8E-211863IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTSKATRGRQ EVEMKKLQKE SSRQVTFSKR RNGLFKKASE ICLPCGANIG IIVFSPKGKP  60
FIFGHPNIET ILDRFFSGSL AMDDYENGSA TTETGLCFQE LYDECEEALE KLKEEKKKRI  120
EHTKEAMKNK GEFWWDEAID DNMGLEELEA YLKAIEELRN NVARKANESM MCDVVADSGG  180
YFDFGIAADA FNFDHCPSHD FGAAGQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737571.11e-153PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1U8NEX81e-151A0A1U8NEX8_GOSHI; agamous-like MADS-box protein AGL61
STRINGEOX972452e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15814714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-40AGAMOUS-like 61