PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2748
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 330aa    MW: 37532.3 Da    PI: 6.2886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2748genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.41.1e-26154207254
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg 54 
                  +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp+v++it +g
  Gh_D12G2748 154 SDIWSWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPRVFIITLQG 207
                  69*************************998********************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25139207IPR003657WRKY domain
PROSITE profilePS5081128.747148222IPR003657WRKY domain
SuperFamilySSF1182901.44E-21149207IPR003657WRKY domain
SMARTSM007743.7E-29153221IPR003657WRKY domain
PfamPF031063.1E-21155207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEHWDCQAVT GETCSNNDAF ISYMENPEFS FGPLSFQHGD EDHLMSFPEV FEPNPNVLDG  60
LMEELYKPFC PELNPYTIPV LEDHVEEPEC QKQQPLVVSG TNKDSTKPKR SRFVIKFMVF  120
TKSFTCTYNF TCFSRKKQQH RVVKHVTADD GLQSDIWSWR KYGQKPIKGS PYPRSYYRCS  180
SSKGCLARKQ VERSCSDPRV FIITLQGFKL RSRSPEHNHG HPTRRNSLAG STRNKSSTVA  240
KPKNLADKNE PHEVAESTVL SPAVIKDESV KQESITMEGG KILTPDIMLS DELVESFEGF  300
GDLFVDQFPD LSHELWFMNE SATLTGGLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-16145222977Probable WRKY transcription factor 4
2ayd_A5e-16141207267WRKY transcription factor 1
2lex_A4e-16145222977Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697901e-180KF669790.1 Gossypium hirsutum WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737734.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1U8NIP20.0A0A1U8NIP2_GOSHI; WRKY transcription factor 22-like
STRINGGorai.008G250300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-37WRKY family protein