PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2688
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 361aa    MW: 39967.1 Da    PI: 4.5326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2688genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19129178255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Gh_D12G2688 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178
                  89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-29128186IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21129186IPR016177DNA-binding domain
PfamPF008479.6E-13129178IPR001471AP2/ERF domain
CDDcd000183.40E-33129185No hitNo description
SMARTSM003803.2E-38129192IPR001471AP2/ERF domain
PROSITE profilePS5103223.63129186IPR001471AP2/ERF domain
PRINTSPR003674.0E-10130141IPR001471AP2/ERF domain
PRINTSPR003674.0E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEHSILCPIK YTEHKNFTRK FRKPSVKSKK VSSDYDRTYG GEGGDVRRIV RVSVTDPDAT  60
DSSSDEDADF FGRQRVKRYV NEINIEVVAA AATTTSGAVN CNRKRTAAEA ATGCRRPVKL  120
SSTNGSGRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD  180
ALTNFVTPPA KENNEKPENL NVSSVSGYES GDESAHNLSS PTSVLNFRTQ SSEETAVEPK  240
KQPHESQEEE SKPLPLKEEE LLVPTECQGE TETNLPDISM YDLPLDFPSV DEFFNTSVSG  300
LSVFDDTDMV LPDSSVFSDG FGDLLVHSPP DFGCSSSSTI CQVDDYFEDI DDLFFSDPLV  360
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21127185362ATERF1
3gcc_A3e-21127185362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734141.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1U8N4X10.0A0A1U8N4X1_GOSHI; ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2P5R9C40.0A0A2P5R9C4_GOSBA; Uncharacterized protein
STRINGGorai.008G271200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-60cytokinin response factor 4